_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:3     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-22
 Query name: gi|992185819|ref|XP_015458696.1| PREDICTED: migration and invasion enhancer 1-like [Astyanax mexicanus]
 Query range: 30-118  (total 118)

 Target: /data/www-rg/seblastian_results/136125307/tempfiles/temptarget.fasta
 Chromosome: CM007946.1:subseq_80035425,104890_ Strand: +
 Positions:
 -Exon 1  50000        50108
 -Exon 2  51241        51317
 -Exon 3  51426        51506

 Redox box: no

Query   VFSSGGUGYEPRYQELKRVVVAEFPEAAVSGFVGRQG <---Intron---> SFEIEINGQLVFSKLETSGFPYEDD <---Intron---> VMDAIQ
        |  |||||| |||||| ||| ||| || ||||||||| <   1132bp   > |||||||||/||||||||||||||| <   108bp    > /|||||
Target  VVFSGGUGYGPRYQELARVVTAEFTEAEVSGFVGRQG                SFEIEINGQVVFSKLETSGFPYEDD                IMDAIQ
        ggtaggtgtgcctcgcgcggaggtaggggtgtggacg                atgagaagcggttacgaagtctggg                aaggac
        tttgggggagcgaaatcgttccatcacatcgttgga                ggtatatagatttcatacggtcaaaa                ttacta
        tctctaagcgcctggcggtccgactagaggccaaga                cttgtgccgaatccgcaacccatacc                cgttag
              *                                                                                             

Query   KAHDGKPVEKITKSQPPCVIL
        ||||||||||||||/||||||
Target  KAHDGKPVEKITKSRPPCVIL
        agcggacggaaaaaccctgac
        acaagactaatcaggccgttt
        acttcgagggccgccgttccg
                             
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 264 ; UGA-SECIS: 510

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = CM007946.1:subseq_80035425,104890_ Strand = + Positions = 51771 - 51838
 Found by:  Infernal (score=27.37) Covels (score=17.83)
 Stem2 length = 8   Apical loop length = 11   Insertion in stem2 = 0, 1
 Free Energy = -16.6

         ..(((((((.......(((((((((((((((...............))))))).))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggcca-ggcCuGAUGuuuuuucaugaccggc
         .((((((((---....{[[{(((({{((((......-..-----...))))}}.))))}]]}..--....)))))))).
 target  UCCAGGACU---UAUAUGAUUACUCUAGCCCAAAGC-UG-----AAAGGUUUAUAGUAUGAUGA--CCCCAGUCCUGGC
                         ****           ^^^                        ****